lineage.export_states

This file exports excel sheets of lineages of cells with their states assigned to them after fitting.

Functions

`assign_states`(input_X)	Given a list of lineages, it returns a 2D array of cell states in the form of a tree that will then be written into excel sheets.
`deintegrate`(population, len_condition[, gem])	Given the tHMMobj.X and the array that holds lengths of excel sheets for a condition, it returns a list including lineages corresponding to each excel sheet.
`write_onExcel`(lapt_tHMMobj_list, len_lp_cntr, ...[, gem])	Write cell states with the pattern of input data (in a binary format) to excel sheets.

Module Contents

lineage.export_states.assign_states(input_X)

Given a list of lineages, it returns a 2D array of cell states in the form of a tree that will then be written into excel sheets. :param input_X: list of lineages.

Parameters:: input_X (list)

lineage.export_states.deintegrate(population, len_condition, gem=False): Given the tHMMobj.X and the array that holds lengths of excel sheets for a condition, it returns a list including lineages corresponding to each excel sheet.

lineage.export_states.write_onExcel(lapt_tHMMobj_list, len_lp_cntr, len_lp_25, len_lp_50, len_lp_250, conc1, conc2, conc3, gem=False): Write cell states with the pattern of input data (in a binary format) to excel sheets.