lineage.Lineage_collections

This file is to collect those lineages that have the same condition, and have 3 or greater number of cells in their lineages.

Attributes

`desired_num_states`
`E`
`E2`
`gem5uM`
`Tax2uM`
`Tax7uM`
`Palbo250uM`
`pbs`
`egf`
`hgf`
`osm`
`AllLapatinib`
`AllGemcitabine`
`GFs`

Functions

`popout_single_lineages`(lineages)	To remove lineages with cell numbers <= 5.
`load_condition`(filename)
`load_conditions`(filenames)
`load_replicate_groups`(replicate_file_groups)

Module Contents

lineage.Lineage_collections.desired_num_states = 2

lineage.Lineage_collections.E

lineage.Lineage_collections.E2

lineage.Lineage_collections.popout_single_lineages(lineages): To remove lineages with cell numbers <= 5.

lineage.Lineage_collections.load_condition(filename)

Parameters:: filename (str)
Return type:: list[lineage.LineageTree.LineageTree]

lineage.Lineage_collections.load_conditions(filenames)

Parameters:: filenames (list[str])
Return type:: list[lineage.LineageTree.LineageTree]

lineage.Lineage_collections.load_replicate_groups(replicate_file_groups)

Parameters:: replicate_file_groups (list[list[str]])

lineage.Lineage_collections.gem5uM = []

lineage.Lineage_collections.Tax2uM = []

lineage.Lineage_collections.Tax7uM = []

lineage.Lineage_collections.Palbo250uM = []

lineage.Lineage_collections.pbs

lineage.Lineage_collections.egf

lineage.Lineage_collections.hgf

lineage.Lineage_collections.osm

lineage.Lineage_collections.AllLapatinib

lineage.Lineage_collections.AllGemcitabine

lineage.Lineage_collections.GFs