lineage.Lineage_collections
===========================

.. py:module:: lineage.Lineage_collections

.. autoapi-nested-parse::

   This file is to collect those lineages that have the same condition, and have 3 or greater number of cells in their lineages.



Attributes
----------

.. autoapisummary::

   lineage.Lineage_collections.desired_num_states
   lineage.Lineage_collections.E
   lineage.Lineage_collections.E2
   lineage.Lineage_collections.gem5uM
   lineage.Lineage_collections.Tax2uM
   lineage.Lineage_collections.Tax7uM
   lineage.Lineage_collections.Palbo250uM
   lineage.Lineage_collections.pbs
   lineage.Lineage_collections.egf
   lineage.Lineage_collections.hgf
   lineage.Lineage_collections.osm
   lineage.Lineage_collections.AllLapatinib
   lineage.Lineage_collections.AllGemcitabine
   lineage.Lineage_collections.GFs


Functions
---------

.. autoapisummary::

   lineage.Lineage_collections.popout_single_lineages
   lineage.Lineage_collections.load_condition
   lineage.Lineage_collections.load_conditions
   lineage.Lineage_collections.load_replicate_groups


Module Contents
---------------

.. py:data:: desired_num_states
   :value: 2


.. py:data:: E

.. py:data:: E2

.. py:function:: popout_single_lineages(lineages)

   To remove lineages with cell numbers <= 5.


.. py:function:: load_condition(filename)

.. py:function:: load_conditions(filenames)

.. py:function:: load_replicate_groups(replicate_file_groups)

.. py:data:: gem5uM
   :value: []


.. py:data:: Tax2uM
   :value: []


.. py:data:: Tax7uM
   :value: []


.. py:data:: Palbo250uM
   :value: []


.. py:data:: pbs

.. py:data:: egf

.. py:data:: hgf

.. py:data:: osm

.. py:data:: AllLapatinib

.. py:data:: AllGemcitabine

.. py:data:: GFs