RISE

Contents:

  • Tutorial for PARAFAC2-RISE on scRNA-seq Data
    • Installation
    • Preprocessing the Dataset
    • Choosing the Rank
    • Running the Factorization
    • Visualizing the Factors
    • Interpreting a Component
  • API Reference
    • Core Functions
      • Factorization
        • pf2()
      • Preprocessing
        • prepare_dataset()
    • Visualization Functions
      • General Plotting
        • plot_r2x()
      • Factor Plotting
        • plot_condition_factors()
        • plot_eigenstate_factors()
        • plot_gene_factors()
      • PaCMAP Visualization
        • plot_labels_pacmap()
        • plot_gene_pacmap()
        • plot_wp_pacmap()
      • Factor Stability
        • plot_fms_diff_ranks()
  • References
    • RISE Paper
    • PARAFAC2 and Factor Match Score
RISE
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© Copyright 2024, Andrew Ramirez, Aaron Meyer.

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