lineage.states.StateDistributionGaPhs
=====================================

.. py:module:: lineage.states.StateDistributionGaPhs

.. autoapi-nested-parse::

   State distribution class for separated G1 and G2 phase durations as observation.



Classes
-------

.. autoapisummary::

   lineage.states.StateDistributionGaPhs.StateDistribution


Module Contents
---------------

.. py:class:: StateDistribution(bern_p1 = 0.9, bern_p2 = 0.75, gamma_a1 = 7.0, gamma_scale1 = 3.0, gamma_a2 = 14.0, gamma_scale2 = 6.0)

   For G1 and G2 separated as observations.


   .. py:attribute:: params


   .. py:attribute:: G1


   .. py:attribute:: G2


   .. py:method:: rvs(size, rng=None)

      User-defined way of calculating a random variable given the parameters of the state stored in that observation's object.



   .. py:method:: dist(other)

      Calculate the Wasserstein distance between this state emissions and the given.



   .. py:method:: dof()

      Return the degrees of freedom.



   .. py:method:: logpdf(x)

      To calculate the log-likelihood of observations to states.



   .. py:method:: estimator(x, gammas)

      User-defined way of estimating the parameters given a list of the tuples of observations from a group of cells.



   .. py:method:: censor_lineage_array(censor_condition, tree, obs, states, desired_experiment_time=2000000000000.0)

      Applies censoring to array representation directly.